-	The concept of generating different design alternatives (the whole plan) based on mathematical equations has many controversial aspects. Researchers tend to computationally facilitate certain tasks of the design process, not the whole process.
-	Defining the typology relationships of the mosque components in table 3 based on a subjective point of view (the researcher’s) returns the design process to its main point, the immaterial issues should be within the designer role (computer can not replace this role). The research must clear this point before going further on creating any design alternative.
-	In design alternatives, what is the space between spaces number 17 and number 3 in figure 2? In figure 3, there are many questions regarding the functional appropriateness of these alternatives. 
-	The research will be more efficiency if it only concentrates on measuring the functionality of a number of existing mosques, without maintaining the possibility of introducing design alternatives.
